/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkXMLUnstructuredDataReader.cxx

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
#include "vtkXMLUnstructuredDataReader.h"
#include "vtkObjectFactory.h"
#include "vtkXMLDataElement.h"
#include "vtkPoints.h"
#include "vtkIdTypeArray.h"
#include "vtkUnsignedCharArray.h"
#include "vtkCellArray.h"
#include "vtkPointSet.h"
#include "vtkInformation.h"
#include "vtkStreamingDemandDrivenPipeline.h"

#include <cassert>


//----------------------------------------------------------------------------
vtkXMLUnstructuredDataReader::vtkXMLUnstructuredDataReader()
{
  this->PointElements = 0;
  this->NumberOfPoints = 0;
  this->TotalNumberOfPoints = 0;
  this->TotalNumberOfCells = 0;

  this->PointsTimeStep = -1;  //invalid state
  this->PointsOffset = static_cast<unsigned long>(-1);
}

//----------------------------------------------------------------------------
vtkXMLUnstructuredDataReader::~vtkXMLUnstructuredDataReader()
{
  if(this->NumberOfPieces)
  {
    this->DestroyPieces();
  }
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::PrintSelf(ostream& os, vtkIndent indent)
{
  this->Superclass::PrintSelf(os, indent);
}

//----------------------------------------------------------------------------
vtkPointSet* vtkXMLUnstructuredDataReader::GetOutputAsPointSet()
{
  return vtkPointSet::SafeDownCast( this->GetOutputDataObject(0) );
}

//----------------------------------------------------------------------------
vtkXMLDataElement*
vtkXMLUnstructuredDataReader
::FindDataArrayWithName(vtkXMLDataElement* eParent, const char* name)
{
  // Find a nested element that represents a data array with the given name.
  // and proper TimeStep
  int i;
  for(i=0;i < eParent->GetNumberOfNestedElements(); ++i)
  {
    vtkXMLDataElement* eNested = eParent->GetNestedElement(i);
    if(strcmp(eNested->GetName(), "DataArray") == 0)
    {
      const char* aName = eNested->GetAttribute("Name");
      if(aName && (strcmp(aName, name) == 0))
      {
        int numTimeSteps = eNested->GetVectorAttribute("TimeStep",
          this->NumberOfTimeSteps, this->TimeSteps);
        assert( numTimeSteps <= this->NumberOfTimeSteps );
        // Check if CurrentTimeStep is in the array and particular field is also:
        int isCurrentTimeInArray =
          vtkXMLReader::IsTimeStepInArray(this->CurrentTimeStep, this->TimeSteps, numTimeSteps);
        // If no time is specified or if time is specified and match then read
        if( !numTimeSteps || isCurrentTimeInArray )
        {
          return eNested;
        }
      }
    }
  }
  return 0;
}

//----------------------------------------------------------------------------
template <class TIn, class TOut>
void vtkXMLUnstructuredDataReaderCopyArray(TIn* in, TOut* out,
                                           vtkIdType length)
{
  for(vtkIdType i = 0; i < length; ++i)
  {
    out[i] = static_cast<TOut>(in[i]);
  }
}

//----------------------------------------------------------------------------
vtkIdTypeArray*
vtkXMLUnstructuredDataReader::ConvertToIdTypeArray(vtkDataArray* a)
{
  // If it is already a vtkIdTypeArray, just return it.
  vtkIdTypeArray* ida = vtkArrayDownCast<vtkIdTypeArray>(a);
  if(ida)
  {
    return ida;
  }

  // Need to convert the data.
  ida = vtkIdTypeArray::New();
  ida->SetNumberOfComponents(a->GetNumberOfComponents());
  ida->SetNumberOfTuples(a->GetNumberOfTuples());
  vtkIdType length = a->GetNumberOfComponents() * a->GetNumberOfTuples();
  vtkIdType* idBuffer = ida->GetPointer(0);
  switch (a->GetDataType())
  {
    vtkTemplateMacro(
      vtkXMLUnstructuredDataReaderCopyArray(
                      static_cast<VTK_TT*>(a->GetVoidPointer(0)),
                      idBuffer, length));
    default:
      vtkErrorMacro("Cannot convert vtkDataArray of type " << a->GetDataType()
                    << " to vtkIdTypeArray.");
      ida->Delete();
      ida = 0;
  }
  a->Delete();
  return ida;
}

//----------------------------------------------------------------------------
vtkUnsignedCharArray*
vtkXMLUnstructuredDataReader::ConvertToUnsignedCharArray(vtkDataArray* a)
{
  // If it is already a vtkUnsignedCharArray, just return it.
  vtkUnsignedCharArray* uca = vtkArrayDownCast<vtkUnsignedCharArray>(a);
  if(uca)
  {
    return uca;
  }

  // Need to convert the data.
  uca = vtkUnsignedCharArray::New();
  uca->SetNumberOfComponents(a->GetNumberOfComponents());
  uca->SetNumberOfTuples(a->GetNumberOfTuples());
  vtkIdType length = a->GetNumberOfComponents() * a->GetNumberOfTuples();
  unsigned char* ucBuffer = uca->GetPointer(0);
  switch (a->GetDataType())
  {
    vtkTemplateMacro(
      vtkXMLUnstructuredDataReaderCopyArray(
        static_cast<VTK_TT*>(a->GetVoidPointer(0)),
        ucBuffer, length));
    default:
      vtkErrorMacro("Cannot convert vtkDataArray of type " << a->GetDataType()
                    << " to vtkUnsignedCharArray.");
      uca->Delete();
      uca = 0;
  }
  a->Delete();
  return uca;
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupEmptyOutput()
{
  this->GetCurrentOutput()->Initialize();
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupOutputTotals()
{
  this->TotalNumberOfPoints = 0;
  for(int i=this->StartPiece; i < this->EndPiece; ++i)
  {
    this->TotalNumberOfPoints += this->NumberOfPoints[i];
  }
  this->StartPoint = 0;
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupNextPiece()
{
  this->StartPoint += this->NumberOfPoints[this->Piece];
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupUpdateExtent(int piece,
                                                     int numberOfPieces,
                                                     int ghostLevel)
{
  this->UpdatePiece = piece;
  this->UpdateNumberOfPieces = numberOfPieces;
  this->UpdateGhostLevel = ghostLevel;

  // If more pieces are requested than available, just return empty
  // pieces for the extra ones.
  if(this->UpdateNumberOfPieces > this->NumberOfPieces)
  {
    this->UpdateNumberOfPieces = this->NumberOfPieces;
  }

  // Find the range of pieces to read.
  if(this->UpdatePiece < this->UpdateNumberOfPieces)
  {
    this->StartPiece = ((this->UpdatePiece*this->NumberOfPieces) /
                        this->UpdateNumberOfPieces);
    this->EndPiece = (((this->UpdatePiece+1)*this->NumberOfPieces) /
                      this->UpdateNumberOfPieces);
  }
  else
  {
    this->StartPiece = 0;
    this->EndPiece = 0;
  }

  // Find the total size of the output.
  this->SetupOutputTotals();
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::ReadXMLData()
{
  // Get the update request.
  int piece;
  int numberOfPieces;
  int ghostLevel;
  vtkInformation* outInfo = this->GetCurrentOutputInformation();
  piece = outInfo->Get(
      vtkStreamingDemandDrivenPipeline::UPDATE_PIECE_NUMBER());
  numberOfPieces = outInfo->Get(
      vtkStreamingDemandDrivenPipeline::UPDATE_NUMBER_OF_PIECES());
  ghostLevel = outInfo->Get(
      vtkStreamingDemandDrivenPipeline::UPDATE_NUMBER_OF_GHOST_LEVELS());

  vtkDebugMacro("Updating piece " << piece << " of " << numberOfPieces
                << " with ghost level " << ghostLevel);

  // Setup the range of pieces that will be read.
  this->SetupUpdateExtent(piece, numberOfPieces, ghostLevel);

  // If there are no data to read, stop now.
  if(this->StartPiece == this->EndPiece)
  {
    return;
  }

  vtkDebugMacro("Reading piece range [" << this->StartPiece
                << ", " << this->EndPiece << ") from file.");

  // Let superclasses read data.  This also allocates output data.
  this->Superclass::ReadXMLData();

  // Split current progress range based on fraction contributed by
  // each piece.
  float progressRange[2] = {0,0};
  this->GetProgressRange(progressRange);

  // Calculate the cumulative fraction of data contributed by each
  // piece (for progress).
  float* fractions = new float[this->EndPiece-this->StartPiece+1];
  int i;
  fractions[0] = 0;
  for(i=this->StartPiece; i < this->EndPiece; ++i)
  {
    int index = i-this->StartPiece;
    fractions[index+1] = (fractions[index] +
                          this->GetNumberOfPointsInPiece(i) +
                          this->GetNumberOfCellsInPiece(i));
  }
  if(fractions[this->EndPiece-this->StartPiece] == 0)
  {
    fractions[this->EndPiece-this->StartPiece] = 1;
  }
  for(i=this->StartPiece; i < this->EndPiece; ++i)
  {
    int index = i-this->StartPiece;
    fractions[index+1] = fractions[index+1] / fractions[this->EndPiece-this->StartPiece];
  }

  // Read the data needed from each piece.
  for(i=this->StartPiece; (i < this->EndPiece && !this->AbortExecute &&
                           !this->DataError); ++i)
  {
    // Set the range of progress for this piece.
    this->SetProgressRange(progressRange, i-this->StartPiece, fractions);

    if(!this->Superclass::ReadPieceData(i))
    {
      // An error occurred while reading the piece.
      this->DataError = 1;
    }
    this->SetupNextPiece();
  }

  delete [] fractions;
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupPieces(int numPieces)
{
  this->Superclass::SetupPieces(numPieces);
  this->NumberOfPoints = new vtkIdType[numPieces];
  this->PointElements = new vtkXMLDataElement*[numPieces];
  for(int i=0;i < numPieces; ++i)
  {
    this->PointElements[i] = 0;
    this->NumberOfPoints[i] = 0;
  }
}

//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::DestroyPieces()
{
  delete [] this->PointElements;
  delete [] this->NumberOfPoints;
  this->PointElements = 0;
  this->NumberOfPoints = 0;
  this->Superclass::DestroyPieces();
}

//----------------------------------------------------------------------------
vtkIdType vtkXMLUnstructuredDataReader::GetNumberOfPoints()
{
  return this->TotalNumberOfPoints;
}

//----------------------------------------------------------------------------
vtkIdType vtkXMLUnstructuredDataReader::GetNumberOfCells()
{
  return this->TotalNumberOfCells;
}

//----------------------------------------------------------------------------
vtkIdType vtkXMLUnstructuredDataReader::GetNumberOfPieces()
{
  return this->NumberOfPieces;
}

//----------------------------------------------------------------------------
vtkIdType vtkXMLUnstructuredDataReader::GetNumberOfPointsInPiece(int piece)
{
  return this->NumberOfPoints[piece];
}

//----------------------------------------------------------------------------
// Note that any changes (add or removing information) made to this method
// should be replicated in CopyOutputInformation
void vtkXMLUnstructuredDataReader::SetupOutputInformation(vtkInformation *outInfo)
{
  this->Superclass::SetupOutputInformation(outInfo);

  if (this->NumberOfPieces > 1)
  {
    outInfo->Set(CAN_HANDLE_PIECE_REQUEST(), 1);
  }
}


//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::CopyOutputInformation(vtkInformation *outInfo, int port)
{
  this->Superclass::CopyOutputInformation(outInfo, port);
}


//----------------------------------------------------------------------------
void vtkXMLUnstructuredDataReader::SetupOutputData()
{
  this->Superclass::SetupOutputData();

  // Create the points array.
  vtkPoints* points = vtkPoints::New();

  // Use the configuration of the first piece since all are the same.
  vtkXMLDataElement* ePoints = this->PointElements[0];
  if (ePoints)
  {
    // Non-zero volume.
    vtkAbstractArray* aa = this->CreateArray(ePoints->GetNestedElement(0));
    vtkDataArray* a = vtkArrayDownCast<vtkDataArray>(aa);
    if (a)
    {
      // Allocate the points array.
      a->SetNumberOfTuples( this->GetNumberOfPoints() );
      points->SetData(a);
      a->Delete();
    }
    else
    {
      if (aa)
      {
        aa->Delete();
      }
      this->DataError = 1;
    }
  }

  vtkPointSet::SafeDownCast(this->GetCurrentOutput())->SetPoints(points);
  points->Delete();
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::ReadPiece(vtkXMLDataElement* ePiece)
{
  if(!this->Superclass::ReadPiece(ePiece))
  {
    return 0;
  }

  if(!ePiece->GetScalarAttribute("NumberOfPoints",
                                 this->NumberOfPoints[this->Piece]))
  {
    vtkErrorMacro("Piece " << this->Piece
                  << " is missing its NumberOfPoints attribute.");
    this->NumberOfPoints[this->Piece] = 0;
    return 0;
  }

  // Find the Points element in the piece.
  int i;
  this->PointElements[this->Piece] = 0;
  for(i=0; i < ePiece->GetNumberOfNestedElements(); ++i)
  {
    vtkXMLDataElement* eNested = ePiece->GetNestedElement(i);
    if(strcmp(eNested->GetName(), "Points") == 0)
    {
      // make sure the XML file is somehow valid:
      if( (this->NumberOfTimeSteps > 0 && eNested->GetNumberOfNestedElements() >= 1) ||
          (this->NumberOfTimeSteps == 0 && eNested->GetNumberOfNestedElements() == 1))
      {
        this->PointElements[this->Piece] = eNested;
      }
    }
  }

  // If there are some points, we require a Points element.
  if(!this->PointElements[this->Piece] &&
     (this->NumberOfPoints[this->Piece] > 0))
  {
    vtkErrorMacro("A piece is missing its Points element "
                  "or element does not have exactly 1 array.");
    return 0;
  }

  return 1;
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::ReadPieceData()
{
  // The amount of data read by the superclass's ReadPieceData comes
  // from point/cell data (we read point specifications here).
  vtkIdType superclassPieceSize =
    (this->NumberOfPointArrays*this->GetNumberOfPointsInPiece(this->Piece)+
     this->NumberOfCellArrays*this->GetNumberOfCellsInPiece(this->Piece));

  // Total amount of data in this piece comes from point/cell data
  // arrays and the point specifications themselves.
  vtkIdType totalPieceSize =
    superclassPieceSize + 1*this->GetNumberOfPointsInPiece(this->Piece);
  if(totalPieceSize == 0)
  {
    totalPieceSize = 1;
  }

  // Split the progress range based on the approximate fraction of
  // data that will be read by each step in this method.
  float progressRange[2] = {0,0};
  this->GetProgressRange(progressRange);
  float fractions[3] =
    {
      0,
      float(superclassPieceSize)/totalPieceSize,
      1
    };

  // Set the range of progress for the superclass.
  this->SetProgressRange(progressRange, 0, fractions);

  // Let the superclass read its data.
  if(!this->Superclass::ReadPieceData())
  {
    return 0;
  }

  vtkPointSet* output = vtkPointSet::SafeDownCast(this->GetCurrentOutput());

  // Set the range of progress for the Points.
  this->SetProgressRange(progressRange, 1, fractions);

  // Read the points array.
  vtkXMLDataElement* ePoints = this->PointElements[this->Piece];
  if(ePoints)
  {
    for(int i=0;(i < ePoints->GetNumberOfNestedElements() &&
             !this->AbortExecute);++i)
    {
      vtkXMLDataElement* eNested = ePoints->GetNestedElement(i);
      if( strcmp(eNested->GetName(), "DataArray") != 0  &&
        strcmp(eNested->GetName(),"Array") != 0 )
      {
        vtkErrorMacro("Invalid Array.");
        this->DataError = 1;
        return 0;
      }
      int needToRead = this->PointsNeedToReadTimeStep(eNested);
      if( needToRead )
      {
        // Read the array.
        if(!this->ReadArrayForPoints(eNested, output->GetPoints()->GetData()))
        {
          vtkErrorMacro("Cannot read points array from " << ePoints->GetName()
            << " in piece " << this->Piece
            << ".  The data array in the element may be too short.");
          return 0;
        }
      }
    }
  }

  return 1;
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::ReadCellArray(vtkIdType numberOfCells,
                                                vtkIdType totalNumberOfCells,
                                                vtkXMLDataElement* eCells,
                                                vtkCellArray* outCells)
{
  if(numberOfCells <= 0)
  {
    return 1;
  }
  else
  {
    if(!eCells)
    {
      return 0;
    }
  }

  // Split progress range into 1/5 for offsets array and 4/5 for
  // connectivity array.  This assumes an average of 4 points per
  // cell.  Unfortunately, we cannot know the length of the
  // connectivity array ahead of time to calculate the real fraction.
  float progressRange[2] = {0,0};
  this->GetProgressRange(progressRange);
  float fractions[3] = {0, 0.2f, 1};

  // Set range of progress for offsets array.
  this->SetProgressRange(progressRange, 0, fractions);

  // Read the cell offsets.
  vtkXMLDataElement* eOffsets = this->FindDataArrayWithName(eCells, "offsets");
  if(!eOffsets)
  {
    vtkErrorMacro("Cannot read cell offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"offsets\" array could not be found.");
    return 0;
  }
  vtkAbstractArray* ac1 = this->CreateArray(eOffsets);
  vtkDataArray* c1 = vtkArrayDownCast<vtkDataArray>(ac1);
  if(!c1 || (c1->GetNumberOfComponents() != 1))
  {
    vtkErrorMacro("Cannot read cell offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"offsets\" array could not be created"
                  << " with one component.");
    if (ac1)
    {
      ac1->Delete();
    }
    return 0;
  }
  c1->SetNumberOfTuples(numberOfCells);
  if(!this->ReadArrayValues(eOffsets, 0, c1,
                            0, numberOfCells, CELL_DATA))
  {
    vtkErrorMacro("Cannot read cell offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"offsets\" array is not long enough.");
    return 0;
  }
  vtkIdTypeArray* cellOffsets = this->ConvertToIdTypeArray(c1);
  if(!cellOffsets)
  {
    vtkErrorMacro("Cannot read cell offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"offsets\" array could not be"
                  << " converted to a vtkIdTypeArray.");
    return 0;
  }

  // Check the contents of the cell offsets array.
  vtkIdType* coffset = cellOffsets->GetPointer(0);
  vtkIdType lastOffset = 0;
  vtkIdType i;
  for(i=0; i < numberOfCells; ++i)
  {
    if(coffset[i] < lastOffset)
    {
      vtkErrorMacro("Cannot read cell connectivity from " << eCells->GetName()
                    << " in piece " << this->Piece
                    << " because the \"offsets\" array is"
                    << " not monotonically increasing or starts with a"
                    << " value less than 1.");
      cellOffsets->Delete();
      return 0;
    }
    lastOffset = coffset[i];
  }

  // Set range of progress for connectivity array.
  this->SetProgressRange(progressRange, 1, fractions);

  // Read the cell point connectivity array.
  vtkIdType cpLength = cellOffsets->GetValue(numberOfCells-1);
  vtkXMLDataElement* eConn = this->FindDataArrayWithName(eCells, "connectivity");
  if(!eConn)
  {
    vtkErrorMacro("Cannot read cell connectivity from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"connectivity\" array could not be found.");
    cellOffsets->Delete();
    return 0;
  }
  vtkAbstractArray* ac0 = this->CreateArray(eConn);
  vtkDataArray* c0 = vtkArrayDownCast<vtkDataArray>(ac0);
  if(!c0 || (c0->GetNumberOfComponents() != 1))
  {
    vtkErrorMacro("Cannot read cell connectivity from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"connectivity\" array could not be created"
                  << " with one component.");
    cellOffsets->Delete();
    if (ac0) { ac0->Delete(); }
    return 0;
  }
  c0->SetNumberOfTuples(cpLength);
  if(!this->ReadArrayValues(eConn, 0, c0, 0, cpLength, CELL_DATA))
  {
    vtkErrorMacro("Cannot read cell connectivity from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"connectivity\" array is not long enough.");
    cellOffsets->Delete();
    return 0;
  }
  vtkIdTypeArray* cellPoints = this->ConvertToIdTypeArray(c0);
  if(!cellPoints)
  {
    vtkErrorMacro("Cannot read cell connectivity from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"connectivity\" array could not be"
                  << " converted to a vtkIdTypeArray.");
    cellOffsets->Delete();
    return 0;
  }


  // Allocate memory in the output connectivity array.
  vtkIdType curSize = 0;
  if (this->Piece > this->StartPiece && outCells->GetData())
  {
    // Refer to BUG #12202 and BUG #12690. The (this->Piece > this->StartPiece)
    // check ensures that when we are reading multiple timesteps, we don't end
    // up appending to existing cell arrays infinitely. An earlier version of
    // the fix assumed that vtkXMLUnstructuredDataReader read only 1 piece at a
    // time, which was incorrect (and hence  BUG #12690).
    curSize = outCells->GetData()->GetNumberOfTuples();
  }

  vtkIdType newSize = curSize+numberOfCells+cellPoints->GetNumberOfTuples();
  vtkIdType* cptr = outCells->WritePointer(totalNumberOfCells, newSize);
  cptr += curSize;

  // Copy the connectivity data.
  vtkIdType previousOffset = 0;
  for(i=0; i < numberOfCells; ++i)
  {
    vtkIdType length = cellOffsets->GetValue(i)-previousOffset;
    *cptr++ = length;
    vtkIdType* sptr = cellPoints->GetPointer(previousOffset);
    // Copy the point indices, but increment them for the appended
    // version's index.
    vtkIdType j;
    for(j=0;j < length; ++j)
    {
      cptr[j] = sptr[j]+this->StartPoint;
    }
    cptr += length;
    previousOffset += length;
  }

  cellPoints->Delete();
  cellOffsets->Delete();

  return 1;
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::ReadFaceArray(vtkIdType numberOfCells,
                                                vtkXMLDataElement* eCells,
                                                vtkIdTypeArray* outFaces,
                                                vtkIdTypeArray* outFaceOffsets)
{

  if(numberOfCells <= 0)
  {
    return 1;
  }
  else
  {
    if(!eCells || !outFaces || !outFaceOffsets)
    {
      return 0;
    }
  }

  // Split progress range into 1/5 for faces array and 4/5 for
  // faceoffsets array.  This assumes an average of 4 points per
  // face.  Unfortunately, we cannot know the length ahead of time
  // to calculate the real fraction.
  float progressRange[2] = {0,0};
  this->GetProgressRange(progressRange);
  float fractions[3] = {0, 0.2f, 1};

  // Set range of progress for offsets array.
  this->SetProgressRange(progressRange, 0, fractions);

  // Read the cell offsets.
  vtkXMLDataElement* efaceOffsets =
    this->FindDataArrayWithName(eCells, "faceoffsets");
  if(!efaceOffsets)
  {
    vtkErrorMacro("Cannot read face offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faceoffsets\" array could not be found.");
    return 0;
  }
  vtkAbstractArray* ac1 = this->CreateArray(efaceOffsets);
  vtkDataArray* c1 = vtkArrayDownCast<vtkDataArray>(ac1);
  if(!c1 || (c1->GetNumberOfComponents() != 1))
  {
    vtkErrorMacro("Cannot read face offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faceoffsets\" array could not be created"
                  << " with one component.");
    if (ac1)
    {
      ac1->Delete();
    }
    return 0;
  }
  c1->SetNumberOfTuples(numberOfCells);
  if(!this->ReadArrayValues(efaceOffsets, 0, c1, 0, numberOfCells))
  {
    vtkErrorMacro("Cannot read face offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faceoffsets\" array is not long enough.");
    return 0;
  }
  vtkIdTypeArray* faceOffsets = this->ConvertToIdTypeArray(c1);
  if(!faceOffsets)
  {
    vtkErrorMacro("Cannot read cell offsets from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"offsets\" array could not be"
                  << " converted to a vtkIdTypeArray.");
    return 0;
  }

  // Note that faceOffsets[i] points to the end of the i-th cell's faces + 1. We
  // now Extract the size of the faces array from faceOffsets array. We compute
  // it by subtracting the size of outFaces from the maximum value of faceOffset
  // array element. The faceOffsets array is incremental, but contains -1 to
  // indicate a non-polyhedron cell.
  vtkIdType* faceoffsetPtr = faceOffsets->GetPointer(0);
  vtkIdType maxOffset = -1;
  for (vtkIdType i = numberOfCells-1; i >= 0; i--)
  {
    if (faceoffsetPtr[i] > -1)
    {
      maxOffset = faceoffsetPtr[i];
      break;
    }
  }

  // Paraview-BUG-13892. The facesArrayLength here should be relative
  // to the current piece being read, NOT the outFaces already read.
  vtkIdType facesArrayLength = maxOffset;

  // special handling of the case of all non-polyhedron cells
  if (facesArrayLength <= 0)
  {
    faceOffsets->Delete();
    return 1;
  }

  // Set range of progress for faces array.
  this->SetProgressRange(progressRange, 1, fractions);

  // Read the faces array.
  vtkXMLDataElement* efaces = this->FindDataArrayWithName(eCells, "faces");
  if(!efaces)
  {
    vtkErrorMacro("Cannot read faces from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faces\" array could not be found.");
    faceOffsets->Delete();
    return 0;
  }
  vtkAbstractArray* ac0 = this->CreateArray(efaces);
  vtkDataArray* c0 = vtkArrayDownCast<vtkDataArray>(ac0);
  if(!c0 || (c0->GetNumberOfComponents() != 1))
  {
    vtkErrorMacro("Cannot read faces from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faces\" array could not be created"
                  << " with one component.");
    faceOffsets->Delete();
    if (ac0) { ac0->Delete(); }
    return 0;
  }
  c0->SetNumberOfTuples(facesArrayLength);
  if(!this->ReadArrayValues(efaces, 0, c0, 0, facesArrayLength))
  {
    vtkErrorMacro("Cannot read faces from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faces\" array is not long enough.");
    faceOffsets->Delete();
    return 0;
  }
  vtkIdTypeArray* faces = this->ConvertToIdTypeArray(c0);
  if(!faces)
  {
    vtkErrorMacro("Cannot read faces from " << eCells->GetName()
                  << " in piece " << this->Piece
                  << " because the \"faces\" array could not be"
                  << " converted to a vtkIdTypeArray.");
    faceOffsets->Delete();
    return 0;
  }


  // Copy the contents of the faceoffsets array.
  // Note that faceOffsets[i] points to the end of the i-th cell + 1. While
  // vtkUnstructuredGrid::FaceLocations[i] points to the beginning of the
  // i-th cell. Need to convert. Also note that for both arrays, a
  // non-polyhedron cell has a offset of -1.
  vtkIdType* facesPtr = faces->GetPointer(0);
  vtkIdType startLoc = outFaceOffsets->GetNumberOfTuples();
  vtkIdType* outFaceOffsetsPtr = outFaceOffsets->WritePointer(startLoc, numberOfCells);
  vtkIdType currLoc = startLoc;

  // (Paraview-BUG-13892)
  // outFaceOffsets should point to the offset location in the outFaces array
  vtkIdType currFaceLoc = outFaces->GetNumberOfTuples();
  for(vtkIdType i = 0; i < numberOfCells; ++i, ++outFaceOffsetsPtr)
  {
    if (faceoffsetPtr[i] < 0)
    {
      *outFaceOffsetsPtr = -1;
    }
    else
    {
      *outFaceOffsetsPtr = currFaceLoc;
      // find next offset
      // read numberOfFaces in a cell
      vtkIdType numberOfCellFaces = facesPtr[currLoc - startLoc];
      currLoc += 1;
      currFaceLoc++;
      for (vtkIdType j = 0; j < numberOfCellFaces; j++)
      {
        // read numberOfPoints in a face
        vtkIdType tmpLoc = currLoc - startLoc;
        vtkIdType numberOfFacePoints = facesPtr[tmpLoc];
        // update the point ids with StartPoint (Paraview-BUG-13892)
        if(this->StartPoint > 0)
        {
          for (vtkIdType pidx = tmpLoc+1; pidx < tmpLoc+1+numberOfFacePoints; pidx++)
          {
            facesPtr[pidx] += this->StartPoint;
          }
        }
        currLoc += numberOfFacePoints + 1;
        currFaceLoc += numberOfFacePoints + 1;
      }
    }
  }

  // sanity check
  if (currLoc - startLoc != facesArrayLength)
  {
    vtkErrorMacro("Cannot read faces from " << eCells->GetName()
                  << " in piece " << this->Piece << " because the \"faces\" and"
                  << " \"faceoffsets\" arrays don't match.");
    faceOffsets->Delete();
    return 0;
  }

  // Copy the contents of the faces array.
  startLoc = outFaces->GetNumberOfTuples();
  vtkIdType length = faces->GetNumberOfTuples();
  vtkIdType* outFacesPtr = outFaces->WritePointer(startLoc, length);
  for(vtkIdType i = 0; i < length; ++i, ++outFacesPtr)
  {
    *outFacesPtr = facesPtr[i];
  }

  faces->Delete();
  faceOffsets->Delete();

  return 1;
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::ReadArrayForPoints(vtkXMLDataElement* da,
                                                     vtkAbstractArray* outArray)
{
  vtkIdType startPoint = this->StartPoint;
  vtkIdType numPoints = this->NumberOfPoints[this->Piece];
  vtkIdType components = outArray->GetNumberOfComponents();
  return this->ReadArrayValues(da, startPoint*components,outArray,
                               0, numPoints*components, POINT_DATA);
}

//----------------------------------------------------------------------------
int vtkXMLUnstructuredDataReader::PointsNeedToReadTimeStep(vtkXMLDataElement *eNested)
{
  // Easy case no timestep:
  int numTimeSteps = eNested->GetVectorAttribute("TimeStep",
    this->NumberOfTimeSteps, this->TimeSteps);
  assert( numTimeSteps <= this->NumberOfTimeSteps );
  if (!numTimeSteps && !this->NumberOfTimeSteps)
  {
    assert( this->PointsTimeStep == -1 ); //No timestep in this file
    return 1;
  }
  // else TimeStep was specified but no TimeValues associated were found
  assert( this->NumberOfTimeSteps );

  // case numTimeSteps > 1
  int isCurrentTimeInArray =
    vtkXMLReader::IsTimeStepInArray(this->CurrentTimeStep, this->TimeSteps, numTimeSteps);
  if( !isCurrentTimeInArray && numTimeSteps)
  {
    return 0;
  }
  // we know that time steps are specified and that CurrentTimeStep is in the array
  // we need to figure out if we need to read the array or if it was forwarded
  // Need to check the current 'offset'
  unsigned long offset;
  if( eNested->GetScalarAttribute("offset", offset) )
  {
    if( this->PointsOffset != offset )
    {
      // save the pointsOffset we are about to read
      assert( this->PointsTimeStep == -1 ); //cannot have mixture of binary and appended
      this->PointsOffset = offset;
      return 1;
    }
  }
  else
  {
    // No offset is specified this is a binary file
    // First thing to check if numTimeSteps == 0:
    if( !numTimeSteps && this->NumberOfTimeSteps && this->PointsTimeStep == -1)
    {
      // Update last PointsTimeStep read
      this->PointsTimeStep = this->CurrentTimeStep;
      return 1;
    }
    int isLastTimeInArray =
      vtkXMLReader::IsTimeStepInArray(this->PointsTimeStep, this->TimeSteps, numTimeSteps);
     // If no time is specified or if time is specified and match then read
    if (isCurrentTimeInArray && !isLastTimeInArray)
    {
      // CurrentTimeStep is in TimeSteps but Last is not := need to read
      // Update last PointsTimeStep read
      this->PointsTimeStep = this->CurrentTimeStep;
      return 1;
    }
  }
  // all other cases we don't need to read:
  return 0;
}

//----------------------------------------------------------------------------
// Returns true if we need to read the data for the current time step
int vtkXMLUnstructuredDataReader::CellsNeedToReadTimeStep(vtkXMLDataElement *eNested,
  int &cellstimestep, unsigned long &cellsoffset)
{
  // Easy case no timestep:
  int numTimeSteps = eNested->GetVectorAttribute("TimeStep",
    this->NumberOfTimeSteps, this->TimeSteps);
  assert( numTimeSteps <= this->NumberOfTimeSteps );
  if (!numTimeSteps && !this->NumberOfTimeSteps)
  {
    assert( cellstimestep == -1 ); //No timestep in this file
    return 1;
  }
  // else TimeStep was specified but no TimeValues associated were found
  assert( !this->NumberOfTimeSteps );

  // case numTimeSteps > 1
  int isCurrentTimeInArray =
    vtkXMLReader::IsTimeStepInArray(this->CurrentTimeStep, this->TimeSteps, numTimeSteps);
  if( !isCurrentTimeInArray && numTimeSteps)
  {
    return 0;
  }
  // we know that time steps are specified and that CurrentTimeStep is in the array
  // we need to figure out if we need to read the array or if it was forwarded
  // Need to check the current 'offset'
  unsigned long offset;
  if( eNested->GetScalarAttribute("offset", offset) )
  {
    if( cellsoffset != offset )
    {
      // save the cellsOffset we are about to read
      assert( cellstimestep == -1 ); //cannot have mixture of binary and appended
      cellsoffset = offset;
      return 1;
    }
  }
  else
  {
    // No offset is specified this is a binary file
    // First thing to check if numTimeSteps == 0:
    if( !numTimeSteps && this->NumberOfTimeSteps && cellstimestep == -1)
    {
      // Update last PointsTimeStep read
      cellstimestep = this->CurrentTimeStep;
      return 1;
    }
    int isLastTimeInArray =
      vtkXMLReader::IsTimeStepInArray(cellstimestep, this->TimeSteps, numTimeSteps);
     // If no time is specified or if time is specified and match then read
    if (isCurrentTimeInArray && !isLastTimeInArray)
    {
      // CurrentTimeStep is in TimeSteps but Last is not := need to read
      // Update last cellstimestep read
      cellstimestep = this->CurrentTimeStep;
      return 1;
    }
  }
  // all other cases we don't need to read:
  return 0;
}

