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#pragma once

#include <pcl/memory.h>
#include <pcl/pcl_base.h>
#include <pcl/pcl_macros.h>
#include <pcl/point_cloud.h>
#include <pcl/point_types.h>
#include <pcl/search/search.h>
#include <string>
#include <set>
#include <boost/graph/adjacency_list.hpp> // for adjacency_list

namespace pcl
{
  /** \brief This class implements the segmentation algorithm based on minimal cut of the graph.
    * The description can be found in the article:
    * "Min-Cut Based Segmentation of Point Clouds"
    * \author: Aleksey Golovinskiy and Thomas Funkhouser.
    */
  template <typename PointT>
  class PCL_EXPORTS MinCutSegmentation : public pcl::PCLBase<PointT>
  {
    public:

      using KdTree = pcl::search::Search<PointT>;
      using KdTreePtr = typename KdTree::Ptr;
      using PointCloud = pcl::PointCloud<PointT>;
      using PointCloudConstPtr = typename PointCloud::ConstPtr;

      using PCLBase <PointT>::input_;
      using PCLBase <PointT>::indices_;
      using PCLBase <PointT>::initCompute;
      using PCLBase <PointT>::deinitCompute;

    public:

      using Traits = boost::adjacency_list_traits< boost::vecS, boost::vecS, boost::directedS >;

      using mGraph = boost::adjacency_list< boost::vecS, boost::vecS, boost::directedS,
                                            boost::property< boost::vertex_name_t, std::string,
                                              boost::property< boost::vertex_index_t, long,
                                                boost::property< boost::vertex_color_t, boost::default_color_type,
                                                  boost::property< boost::vertex_distance_t, long,
                                                    boost::property< boost::vertex_predecessor_t, Traits::edge_descriptor > > > > >,
                                            boost::property< boost::edge_capacity_t, double,
                                              boost::property< boost::edge_residual_capacity_t, double,
                                                boost::property< boost::edge_reverse_t, Traits::edge_descriptor > > > >;

      using CapacityMap = boost::property_map< mGraph, boost::edge_capacity_t >::type;

      using ReverseEdgeMap = boost::property_map< mGraph, boost::edge_reverse_t>::type;

      using VertexDescriptor = Traits::vertex_descriptor;

      using EdgeDescriptor = boost::graph_traits<mGraph>::edge_descriptor;

      using OutEdgeIterator = boost::graph_traits<mGraph>::out_edge_iterator;

      using VertexIterator = boost::graph_traits<mGraph>::vertex_iterator;

      using ResidualCapacityMap = boost::property_map< mGraph, boost::edge_residual_capacity_t >::type;

      using IndexMap = boost::property_map< mGraph, boost::vertex_index_t >::type;

      using InEdgeIterator = boost::graph_traits<mGraph>::in_edge_iterator;

      using mGraphPtr = shared_ptr<mGraph>;

    public:

      /** \brief Constructor that sets default values for member variables. */
      MinCutSegmentation ();

      /** \brief Destructor that frees memory. */

      ~MinCutSegmentation () override;

      /** \brief This method simply sets the input point cloud.
        * \param[in] cloud the const boost shared pointer to a PointCloud
        */
      void
      setInputCloud (const PointCloudConstPtr &cloud) override;

      /** \brief Returns normalization value for binary potentials. For more information see the article. */
      double
      getSigma () const;

      /** \brief Allows to set the normalization value for the binary potentials as described in the article.
        * \param[in] sigma new normalization value
        */
      void
      setSigma (double sigma);

      /** \brief Returns radius to the background. */
      double
      getRadius () const;

      /** \brief Allows to set the radius to the background.
        * \param[in] radius new radius to the background
        */
      void
      setRadius (double radius);

      /** \brief Returns weight that every edge from the source point has. */
      double
      getSourceWeight () const;

      /** \brief Allows to set weight for source edges. Every edge that comes from the source point will have that weight.
        * \param[in] weight new weight
        */
      void
      setSourceWeight (double weight);

      /** \brief Returns search method that is used for finding KNN.
        * The graph is build such way that it contains the edges that connect point and its KNN.
        */
      KdTreePtr
      getSearchMethod () const;

      /** \brief Allows to set search method for finding KNN.
        * The graph is build such way that it contains the edges that connect point and its KNN.
        * \param[in] tree search method that will be used for finding KNN.
        */
      void
      setSearchMethod (const KdTreePtr& tree);

      /** \brief Returns the number of neighbours to find. */
      unsigned int
      getNumberOfNeighbours () const;

      /** \brief Allows to set the number of neighbours to find.
        * \param[in] neighbour_number new number of neighbours
        */
      void
      setNumberOfNeighbours (unsigned int neighbour_number);

      /** \brief Returns the points that must belong to foreground. */
      std::vector<PointT, Eigen::aligned_allocator<PointT> >
      getForegroundPoints () const;

      /** \brief Allows to specify points which are known to be the points of the object.
        * \param[in] foreground_points point cloud that contains foreground points. At least one point must be specified.
        */
      void
      setForegroundPoints (typename pcl::PointCloud<PointT>::Ptr foreground_points);

      /** \brief Returns the points that must belong to background. */
      std::vector<PointT, Eigen::aligned_allocator<PointT> >
      getBackgroundPoints () const;

      /** \brief Allows to specify points which are known to be the points of the background.
        * \param[in] background_points point cloud that contains background points.
        */
      void
      setBackgroundPoints (typename pcl::PointCloud<PointT>::Ptr background_points);

      /** \brief This method launches the segmentation algorithm and returns the clusters that were
        * obtained during the segmentation. The indices of points that belong to the object will be stored
        * in the cluster with index 1, other indices will be stored in the cluster with index 0.
        * \param[out] clusters clusters that were obtained. Each cluster is an array of point indices.
        */
      void
      extract (std::vector <pcl::PointIndices>& clusters);

      /** \brief Returns that flow value that was calculated during the segmentation. */
      double
      getMaxFlow () const;

      /** \brief Returns the graph that was build for finding the minimum cut. */
      mGraphPtr
      getGraph () const;

      /** \brief Returns the colored cloud. Points that belong to the object have the same color. */
      pcl::PointCloud<pcl::PointXYZRGB>::Ptr
      getColoredCloud ();

    protected:

      /** \brief This method simply builds the graph that will be used during the segmentation. */
      bool
      buildGraph ();

      /** \brief Returns unary potential(data cost) for the given point index.
        * In other words it calculates weights for (source, point) and (point, sink) edges.
        * \param[in] point index of the point for which weights will be calculated
        * \param[out] source_weight calculated weight for the (source, point) edge
        * \param[out] sink_weight calculated weight for the (point, sink) edge
        */
      void
      calculateUnaryPotential (int point, double& source_weight, double& sink_weight) const;

      /** \brief This method simply adds the edge from the source point to the target point with a given weight.
        * \param[in] source index of the source point of the edge
        * \param[in] target index of the target point of the edge
        * \param[in] weight weight that will be assigned to the (source, target) edge
        */
      bool
      addEdge (int source, int target, double weight);

      /** \brief Returns the binary potential(smooth cost) for the given indices of points.
        * In other words it returns weight that must be assigned to the edge from source to target point.
        * \param[in] source index of the source point of the edge
        * \param[in] target index of the target point of the edge
        */
      double
      calculateBinaryPotential (int source, int target) const;

      /** \brief This method recalculates unary potentials(data cost) if some changes were made, instead of creating new graph. */
      bool
      recalculateUnaryPotentials ();

      /** \brief This method recalculates binary potentials(smooth cost) if some changes were made, instead of creating new graph. */
      bool
      recalculateBinaryPotentials ();

      /** \brief This method analyzes the residual network and assigns a label to every point in the cloud.
        * \param[in] residual_capacity residual network that was obtained during the segmentation
        */
      void
      assembleLabels (ResidualCapacityMap& residual_capacity);

    protected:

      /** \brief Stores the sigma coefficient. It is used for finding smooth costs. More information can be found in the article. */
      double inverse_sigma_;

      /** \brief Signalizes if the binary potentials are valid. */
      bool binary_potentials_are_valid_;

      /** \brief Used for comparison of the floating point numbers. */
      double epsilon_;

      /** \brief Stores the distance to the background. */
      double radius_;

      /** \brief Signalizes if the unary potentials are valid. */
      bool unary_potentials_are_valid_;

      /** \brief Stores the weight for every edge that comes from source point. */
      double source_weight_;

      /** \brief Stores the search method that will be used for finding K nearest neighbors. Neighbours are used for building the graph. */
      KdTreePtr search_;

      /** \brief Stores the number of neighbors to find. */
      unsigned int number_of_neighbours_;

      /** \brief Signalizes if the graph is valid. */
      bool graph_is_valid_;

      /** \brief Stores the points that are known to be in the foreground. */
      std::vector<PointT, Eigen::aligned_allocator<PointT> > foreground_points_;

      /** \brief Stores the points that are known to be in the background. */
      std::vector<PointT, Eigen::aligned_allocator<PointT> > background_points_;

      /** \brief After the segmentation it will contain the segments. */
      std::vector <pcl::PointIndices> clusters_;

      /** \brief Stores the graph for finding the maximum flow. */
      mGraphPtr graph_;

      /** \brief Stores the capacity of every edge in the graph. */
      std::shared_ptr<CapacityMap> capacity_;

      /** \brief Stores reverse edges for every edge in the graph. */
      std::shared_ptr<ReverseEdgeMap> reverse_edges_;

      /** \brief Stores the vertices of the graph. */
      std::vector< VertexDescriptor > vertices_;

      /** \brief Stores the information about the edges that were added to the graph. It is used to avoid the duplicate edges. */
      std::vector< std::set<int> > edge_marker_;

      /** \brief Stores the vertex that serves as source. */
      VertexDescriptor source_;

      /** \brief Stores the vertex that serves as sink. */
      VertexDescriptor sink_;

      /** \brief Stores the maximum flow value that was calculated during the segmentation. */
      double max_flow_;

    public:
      PCL_MAKE_ALIGNED_OPERATOR_NEW
  };
}

#ifdef PCL_NO_PRECOMPILE
#include <pcl/segmentation/impl/min_cut_segmentation.hpp>
#endif
