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 *
 *  Point Cloud Library (PCL) - www.pointclouds.org
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#include <pcl/apps/modeler/cloud_mesh.h>
#include <pcl/common/transforms.h>
#include <pcl/filters/filter_indices.h>
#include <pcl/io/obj_io.h>
#include <pcl/io/pcd_io.h>
#include <pcl/visualization/point_cloud_handlers.h>
#include <pcl/PolygonMesh.h>

#include <vtkCellArray.h>
#include <vtkDataArray.h>

//////////////////////////////////////////////////////////////////////////////////////////////
pcl::modeler::CloudMesh::CloudMesh()
: vtk_points_(vtkSmartPointer<vtkPoints>::New())
, vtk_polygons_(vtkSmartPointer<vtkCellArray>::New())
{
  cloud_.reset(new pcl::PointCloud<pcl::PointSurfel>());
  vtk_points_->SetDataTypeToFloat();
}

//////////////////////////////////////////////////////////////////////////////////////////////
pcl::modeler::CloudMesh::CloudMesh(PointCloudPtr cloud)
: cloud_(std::move(cloud))
, vtk_points_(vtkSmartPointer<vtkPoints>::New())
, vtk_polygons_(vtkSmartPointer<vtkCellArray>::New())
{
  vtk_points_->SetDataTypeToFloat();
  updateVtkPoints();
}

//////////////////////////////////////////////////////////////////////////////////////////////
pcl::modeler::CloudMesh::~CloudMesh() {}

//////////////////////////////////////////////////////////////////////////////////////////////
std::vector<std::string>
pcl::modeler::CloudMesh::getAvaiableFieldNames() const
{
  // TODO:
  return {};
}

//////////////////////////////////////////////////////////////////////////////////////////////
bool
pcl::modeler::CloudMesh::open(const std::string& filename)
{
  if (pcl::io::loadPCDFile(filename, *cloud_) != 0)
    return false;

  updateVtkPoints();

  return true;
}

//////////////////////////////////////////////////////////////////////////////////////////////
bool
pcl::modeler::CloudMesh::save(const std::string& filename) const
{
  if (filename.rfind(".obj") == (filename.length() - 4)) {
    pcl::PolygonMesh polygon_mesh;
    pcl::toPCLPointCloud2(*cloud_, polygon_mesh.cloud);
    polygon_mesh.polygons = polygons_;
    return pcl::io::saveOBJFile(filename, polygon_mesh, true) == 0;
  }

  return pcl::io::savePCDFile(filename, *cloud_, true) == 0;
}

//////////////////////////////////////////////////////////////////////////////////////////////
bool
pcl::modeler::CloudMesh::save(const std::vector<const CloudMesh*>& cloud_meshes,
                              const std::string& filename)
{
  if (cloud_meshes.empty())
    return false;

  if (cloud_meshes.size() == 1)
    return cloud_meshes[0]->save(filename);

  CloudMesh cloud_mesh;
  for (const auto& mesh : cloud_meshes) {
    if (filename.rfind(".obj") == (filename.length() - 4)) {
      index_t delta = cloud_mesh.cloud_->size();
      for (auto polygon : mesh->polygons_) {
        for (index_t& vertice : polygon.vertices)
          vertice += delta;
        cloud_mesh.polygons_.push_back(polygon);
      }
    }

    *cloud_mesh.cloud_ += *(mesh->cloud_);
  }

  return cloud_mesh.save(filename);
}

//////////////////////////////////////////////////////////////////////////////////////////////
void
pcl::modeler::CloudMesh::getColorScalarsFromField(
    vtkSmartPointer<vtkDataArray>& scalars, const std::string& field) const
{
  if (field == "rgb" || field == "rgba") {
    pcl::visualization::PointCloudColorHandlerRGBField<PointT> color_handler(cloud_);
    scalars = color_handler.getColor();
    return;
  }

  if (field == "random") {
    pcl::visualization::PointCloudColorHandlerRandom<PointT> color_handler(cloud_);
    scalars = color_handler.getColor();
    return;
  }

  pcl::visualization::PointCloudColorHandlerGenericField<PointT> color_handler(cloud_,
                                                                               field);
  scalars = color_handler.getColor();
}

//////////////////////////////////////////////////////////////////////////////////////////////
void
pcl::modeler::CloudMesh::updateVtkPoints()
{
  if (vtk_points_->GetData() == nullptr)
    vtk_points_->SetData(vtkSmartPointer<vtkFloatArray>::New());

  vtkFloatArray* data = dynamic_cast<vtkFloatArray*>(vtk_points_->GetData());
  data->SetNumberOfComponents(3);

  // If the dataset has no invalid values, just copy all of them
  if (cloud_->is_dense) {
    vtkIdType nr_points = cloud_->size();
    data->SetNumberOfValues(3 * nr_points);

    for (vtkIdType i = 0; i < nr_points; ++i) {
      data->SetValue(i * 3 + 0, (*cloud_)[i].x);
      data->SetValue(i * 3 + 1, (*cloud_)[i].y);
      data->SetValue(i * 3 + 2, (*cloud_)[i].z);
    }
  }
  // Need to check for NaNs, Infs, ec
  else {
    pcl::IndicesPtr indices(new pcl::Indices());
    pcl::removeNaNFromPointCloud(*cloud_, *indices);

    data->SetNumberOfValues(3 * indices->size());

    for (vtkIdType i = 0, i_end = indices->size(); i < i_end; ++i) {
      vtkIdType idx = (*indices)[i];
      data->SetValue(i * 3 + 0, (*cloud_)[idx].x);
      data->SetValue(i * 3 + 1, (*cloud_)[idx].y);
      data->SetValue(i * 3 + 2, (*cloud_)[idx].z);
    }
  }
  data->Squeeze();
}

//////////////////////////////////////////////////////////////////////////////////////////////
void
pcl::modeler::CloudMesh::updateVtkPolygons()
{
  vtk_polygons_->Reset();

  if (cloud_->is_dense) {
    for (const auto& polygon : polygons_) {
      vtk_polygons_->InsertNextCell(polygon.vertices.size());
      for (const auto& vertex : polygon.vertices)
        vtk_polygons_->InsertCellPoint(vertex);
    }
  }
  else {
    pcl::IndicesPtr indices(new pcl::Indices());
    pcl::removeNaNFromPointCloud(*cloud_, *indices);

    for (const auto& polygon : polygons_) {
      vtk_polygons_->InsertNextCell(polygon.vertices.size());
      for (const auto& vertex : polygon.vertices)
        vtk_polygons_->InsertCellPoint((*indices)[vertex]);
    }
  }
}

//////////////////////////////////////////////////////////////////////////////////////////////
void
pcl::modeler::CloudMesh::transform(
    double tx, double ty, double tz, double rx, double ry, double rz)
{
  Eigen::Vector4f centroid;
  pcl::compute3DCentroid(*cloud_, centroid);

  CloudMesh::PointCloud mean_cloud = *cloud_;
  pcl::demeanPointCloud(*cloud_, centroid, mean_cloud);

  rx *= M_PI / 180;
  ry *= M_PI / 180;
  rz *= M_PI / 180;
  Eigen::Affine3f affine_transform = pcl::getTransformation(
      float(tx), float(ty), float(tz), float(rx), float(ry), float(rz));
  CloudMesh::PointCloud transform_cloud = mean_cloud;
  pcl::transformPointCloudWithNormals(
      mean_cloud, transform_cloud, affine_transform.matrix());

  centroid = -centroid;
  pcl::demeanPointCloud(transform_cloud, centroid, *cloud_);
}
