Commit 6ea50cc1 authored by Timothy M. Shead's avatar Timothy M. Shead
Browse files

ENH: Added statistics examples, courtesy of Tom Otahal

parent 807235a7
from vtk import *
from numeric import *
import pylab
# Define script parameters
numbvert = 2000
edgeprob = 0.10
histbins = 100
rgsource = vtkRandomGraphSource()
# Set number of vertices and the probability of an edge existing between any two vertices
rgsource.SetNumberOfVertices(numbvert)
rgsource.SetUseEdgeProbability(1)
rgsource.SetEdgeProbability(edgeprob)
# Calculate vertex degree, result is stored in an array named "VertexDegree"
degree = vtkVertexDegree()
degree.AddInputConnection(rgsource.GetOutputPort())
# Force pipeline to update output
degree.Update()
# Convert "VertexDegree" array into a numpy data array
nda = getarray(degree.GetOutput().GetVertexData().GetArray("VertexDegree"))
bnda = numpy.random.binomial(n = numbvert, p = edgeprob, size = nda.size)
# Create histograms from random graph vertex degree and binomial distribution
(bn, bbins) = numpy.histogram(bnda, bins = histbins, normed=1)
(n, bins) = numpy.histogram(nda, bins = histbins,normed=1)
p1 = pylab.bar(bins, n, color = 'r')
p2 = pylab.bar(bbins, bn, color = 'b')
pylab.legend((p1[0],p2[0]), ('graph vertex degree', 'binomial distribution'))
pylab.ylabel('Normalized Histogram Count')
pylab.xlabel('Vertex Degree Bin')
pylab.title('Normalized Histograms')
# Layout and display graph
view = vtkGraphLayoutView()
view.AddRepresentationFromInputConnection(degree.GetOutputPort())
window = vtkRenderWindow()
window.SetSize(600, 600)
view.SetupRenderWindow(window)
pylab.show()
window.GetInteractor().Start()
from vtk import *
from numeric import *
# Define script parameters
numbvert = 20
edgeprob = 0.50
# Create a random graph
rgsource = vtkRandomGraphSource()
degree = vtkVertexDegree()
# Set number of vertices and the probability of an edge existing between any two vertices
rgsource.SetNumberOfVertices(numbvert)
rgsource.SetUseEdgeProbability(1)
rgsource.SetEdgeProbability(edgeprob)
# Calculate vertex degree of each vertex
degree = vtkVertexDegree()
degree.AddInputConnection(rgsource.GetOutputPort())
# Force pipeline to update output
degree.Update()
# Convert vtk "VertexDegree" array into a numpy data array
nda = getarray(degree.GetOutput().GetVertexData().GetArray("VertexDegree"))
# Compute vertex degree distance from vertex degree mean for each vertex
verdis = numpy.abs(nda[:] - nda.mean())
# Convert the Numpy array "verdis" to a vtkDataArray and display distance from the mean at each vertex
vtkarray = setarray(verdis)
vtkarray.SetName("DegDistance")
degree.GetOutput().GetVertexData().AddArray(vtkarray)
# Layout and display graph
view = vtkGraphLayoutView()
view.AddRepresentationFromInputConnection(degree.GetOutputPort())
view.SetVertexLabelArrayName("DegDistance")
view.SetVertexLabelVisibility(True)
window = vtkRenderWindow()
window.SetSize(600, 600)
view.SetupRenderWindow(window)
window.GetInteractor().Start()
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